IL_3JAJ_188

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGGGCAAGUCUG*CAGCU

Length

17 nucleotides

Bulged bases

3JAJ|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|A|599
3JAJ|1|S2|G|600
3JAJ|1|S2|G|601
3JAJ|1|S2|G|602
3JAJ|1|S2|C|603
3JAJ|1|S2|A|604
3JAJ|1|S2|A|605
3JAJ|1|S2|G|606
3JAJ|1|S2|U|607
3JAJ|1|S2|C|608
3JAJ|1|S2|U|609
3JAJ|1|S2|G|610
*
3JAJ|1|S2|C|633
3JAJ|1|S2|A|634
3JAJ|1|S2|G|635
3JAJ|1|S2|C|636
3JAJ|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

Ribosomal protein uS5

Chain SD

Ribosomal protein uS3

Chain SJ

Ribosomal protein uS4

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30