IL_3JAJ_197

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGAGUGUUCAAAGCAG*CUGGAU

Length

22 nucleotides

Bulged bases

3JAJ|1|S2|G|821, 3JAJ|1|S2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|A|816
3JAJ|1|S2|G|817
3JAJ|1|S2|A|818
3JAJ|1|S2|G|819
3JAJ|1|S2|U|820
3JAJ|1|S2|G|821
3JAJ|1|S2|U|822
3JAJ|1|S2|U|823
3JAJ|1|S2|C|824
3JAJ|1|S2|A|825
3JAJ|1|S2|A|826
3JAJ|1|S2|A|827
3JAJ|1|S2|G|828
3JAJ|1|S2|C|829
3JAJ|1|S2|A|830
3JAJ|1|S2|G|831
*
3JAJ|1|S2|C|843
3JAJ|1|S2|U|844
3JAJ|1|S2|G|845
3JAJ|1|S2|G|846
3JAJ|1|S2|A|847
3JAJ|1|S2|U|848

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SY

Ribosomal protein eS24