IL_3JAJ_200
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGGAC*GUUUUC
- Length
- 11 nucleotides
- Bulged bases
- 3JAJ|1|S2|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_200 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.2981
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3JAJ|1|S2|G|923
3JAJ|1|S2|G|924
3JAJ|1|S2|G|925
3JAJ|1|S2|A|926
3JAJ|1|S2|C|927
*
3JAJ|1|S2|G|1014
3JAJ|1|S2|U|1015
3JAJ|1|S2|U|1016
3JAJ|1|S2|U|1017
3JAJ|1|S2|U|1018
3JAJ|1|S2|C|1019
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SN
- Ribosomal protein uS15
- Chain SW
- Ribosomal protein uS8
- Chain Sb
- Ribosomal protein eS27
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