IL_3JAJ_218
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 3JAJ|1|S2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_218 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.2413
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JAJ|1|S2|U|1329
3JAJ|1|S2|G|1330
3JAJ|1|S2|C|1331
3JAJ|1|S2|A|1332
3JAJ|1|S2|U|1333
*
3JAJ|1|S2|A|1498
3JAJ|1|S2|U|1499
3JAJ|1|S2|G|1500
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SD
- Ribosomal protein uS3
- Chain SK
- Ribosomal protein eS10
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- Ribosomal protein eS31
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