IL_3JAJ_226

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

3JAJ|1|S2|C|1554, 3JAJ|1|S2|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|G|1550
3JAJ|1|S2|U|1551
3JAJ|1|S2|G|1552
3JAJ|1|S2|C|1553
3JAJ|1|S2|C|1554
3JAJ|1|S2|U|1555
3JAJ|1|S2|A|1556
3JAJ|1|S2|C|1557
3JAJ|1|S2|C|1558
*
3JAJ|1|S2|G|1577
3JAJ|1|S2|U|1578
3JAJ|1|S2|A|1579
3JAJ|1|S2|A|1580
3JAJ|1|S2|C|1581
3JAJ|1|S2|C|1582

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SD

Ribosomal protein uS3

Chain SK

Ribosomal protein eS10

Chain SU

Ribosomal protein uS10

Chain Sd

Ribosomal protein uS14