IL_3JAJ_265

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCUAGG*CCGGG

Length

11 nucleotides

Bulged bases

3JAJ|1|5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|C|2310
3JAJ|1|5|C|2311
3JAJ|1|5|U|2312
3JAJ|1|5|A|2313
3JAJ|1|5|G|2314
3JAJ|1|5|G|2315
*
3JAJ|1|5|C|2324
3JAJ|1|5|C|2325
3JAJ|1|5|G|2326
3JAJ|1|5|G|2327
3JAJ|1|5|G|2328

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28