3D structure

PDB id
3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AGGUAAG*CCUACCU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAJ|1|5|A|2840
3JAJ|1|5|G|2841
3JAJ|1|5|G|2842
3JAJ|1|5|U|2843
3JAJ|1|5|A|2844
3JAJ|1|5|A|2845
3JAJ|1|5|G|2846
*
3JAJ|1|5|C|3842
3JAJ|1|5|C|3843
3JAJ|1|5|U|3844
3JAJ|1|5|A|3845
3JAJ|1|5|C|3846
3JAJ|1|5|C|3847
3JAJ|1|5|U|3848

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain V
Ribosomal protein uL14
Chain W
Ribosomal protein eL24
Chain d
Ribosomal protein eL31

Coloring options:

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