IL_3JAJ_288

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUAUCAA*UGACCACGG

Length

16 nucleotides

Bulged bases

3JAJ|1|S2|U|361, 3JAJ|1|S2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|C|358
3JAJ|1|S2|U|359
3JAJ|1|S2|A|360
3JAJ|1|S2|U|361
3JAJ|1|S2|C|362
3JAJ|1|S2|A|363
3JAJ|1|S2|A|364
*
3JAJ|1|S2|U|396
3JAJ|1|S2|G|397
3JAJ|1|S2|A|398
3JAJ|1|S2|C|399
3JAJ|1|S2|C|400
3JAJ|1|S2|A|401
3JAJ|1|S2|C|402
3JAJ|1|S2|G|403
3JAJ|1|S2|G|404

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17

Chain SX

Ribosomal protein uS12