IL_3JAJ_315
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GCUC*GUGAGC
- Length
- 10 nucleotides
- Bulged bases
- 3JAJ|1|5|G|4522, 3JAJ|1|5|A|4523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_315 not in the Motif Atlas
- Geometric match to IL_5EW4_001
- Geometric discrepancy: 0.3249
- The information below is about IL_5EW4_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_40017.1
- Basepair signature
- cWW-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JAJ|1|5|G|4455
3JAJ|1|5|C|4456
3JAJ|1|5|U|4457
3JAJ|1|5|C|4458
*
3JAJ|1|5|G|4520
3JAJ|1|5|U|4521
3JAJ|1|5|G|4522
3JAJ|1|5|A|4523
3JAJ|1|5|G|4524
3JAJ|1|5|C|4525
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Nascent chain
- Chain B
- Ribosomal protein uL3
- Chain V
- Ribosomal protein uL14
Coloring options: