IL_3JAJ_322

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_322 not in the Motif Atlas

Geometric match to IL_4V84_420

Geometric discrepancy: 0.3603

The information below is about IL_4V84_420

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAJ|1|S2|U|1839
3JAJ|1|S2|U|1840
3JAJ|1|S2|C|1841
*
3JAJ|1|S2|G|1858
3JAJ|1|S2|A|1859

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26

Chain n

Ribosomal protein eL41