IL_3JAM_009

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

3JAM|1|2|C|114, 3JAM|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_009 not in the Motif Atlas

Geometric match to IL_6E7L_003

Geometric discrepancy: 0.3385

The information below is about IL_6E7L_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

3JAM|1|2|U|113
3JAM|1|2|C|114
3JAM|1|2|G|115
3JAM|1|2|U|116
3JAM|1|2|U|117
*
3JAM|1|2|A|298
3JAM|1|2|A|299
3JAM|1|2|A|300

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17