IL_3JAM_031

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12582.1

Basepair signature

cWW-L-L-L-cSH-L-cWW

Number of instances in this motif group

17

Unit IDs

3JAM|1|2|A|549
3JAM|1|2|G|550
3JAM|1|2|G|551
3JAM|1|2|G|552
3JAM|1|2|C|553
3JAM|1|2|A|554
3JAM|1|2|A|555
3JAM|1|2|G|556
*
3JAM|1|2|C|586
3JAM|1|2|U|587

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain J

uS4

Chain e

eS30