IL_3JAM_033

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3JAM|1|2|A|578, 3JAM|1|2|U|580, 3JAM|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29931.1

Basepair signature

cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3JAM|1|2|G|561
3JAM|1|2|U|562
3JAM|1|2|G|563
3JAM|1|2|C|564
3JAM|1|2|C|565
3JAM|1|2|A|566
3JAM|1|2|G|567
*
3JAM|1|2|C|574
3JAM|1|2|G|575
3JAM|1|2|G|576
3JAM|1|2|U|577
3JAM|1|2|A|578
3JAM|1|2|A|579
3JAM|1|2|U|580
3JAM|1|2|U|581
3JAM|1|2|C|582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain X

uS12

Chain e

eS30

Chain i

eIF1A