IL_3JAM_036

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89727.1

Basepair signature

cWW-tSH-R-tHW-L-cWW

Number of instances in this motif group

8

Unit IDs

3JAM|1|2|C|626
3JAM|1|2|G|627
3JAM|1|2|U|628
3JAM|1|2|A|629
3JAM|1|2|G|630
*
3JAM|1|2|U|967
3JAM|1|2|C|968
3JAM|1|2|A|969
3JAM|1|2|A|970
3JAM|1|2|G|971

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17

Chain N

uS15

Chain W

uS8

Chain X

uS12