IL_3JAM_037

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUCCGGUC*GGUUUUUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_40006.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3JAM|1|2|G|650
3JAM|1|2|U|651
3JAM|1|2|C|652
3JAM|1|2|C|653
3JAM|1|2|G|654
3JAM|1|2|G|655
3JAM|1|2|U|656
3JAM|1|2|C|657
*
3JAM|1|2|G|676
3JAM|1|2|G|677
3JAM|1|2|U|678
3JAM|1|2|U|679
3JAM|1|2|U|680
3JAM|1|2|U|681
3JAM|1|2|U|682
3JAM|1|2|C|683

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4