IL_3JAM_040

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAAAAAAUU*AUAUUAGC

Length

17 nucleotides

Bulged bases

3JAM|1|2|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22201.1

Basepair signature

cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

5

Unit IDs

3JAM|1|2|G|751
3JAM|1|2|A|752
3JAM|1|2|A|753
3JAM|1|2|A|754
3JAM|1|2|A|755
3JAM|1|2|A|756
3JAM|1|2|A|757
3JAM|1|2|U|758
3JAM|1|2|U|759
*
3JAM|1|2|A|790
3JAM|1|2|U|791
3JAM|1|2|A|792
3JAM|1|2|U|793
3JAM|1|2|U|794
3JAM|1|2|A|795
3JAM|1|2|G|796
3JAM|1|2|C|797

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain L

uS17

Chain W

uS8