IL_3JAM_047

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGGGAUCGAAG*CGUAGUCU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83280.1

Basepair signature

cWW-L-R-L-L-L-cWW-L-R-tSH-L-R-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3JAM|1|2|G|983
3JAM|1|2|G|984
3JAM|1|2|G|985
3JAM|1|2|G|986
3JAM|1|2|A|987
3JAM|1|2|U|988
3JAM|1|2|C|989
3JAM|1|2|G|990
3JAM|1|2|A|991
3JAM|1|2|A|992
3JAM|1|2|G|993
*
3JAM|1|2|C|1009
3JAM|1|2|G|1010
3JAM|1|2|U|1011
3JAM|1|2|A|1012
3JAM|1|2|G|1013
3JAM|1|2|U|1014
3JAM|1|2|C|1015
3JAM|1|2|U|1016

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

uS15

Chain O

uS11

Chain a

eS26

Chain j

eIF1