IL_3JAM_048

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

3JAM|1|2|C|1095, 3JAM|1|2|U|1097, 3JAM|1|2|G|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50989.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

3JAM|1|2|C|1033
3JAM|1|2|G|1034
3JAM|1|2|A|1035
*
3JAM|1|2|U|1094
3JAM|1|2|C|1095
3JAM|1|2|U|1096
3JAM|1|2|U|1097
3JAM|1|2|U|1098
3JAM|1|2|G|1099
3JAM|1|2|G|1100

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain L

uS17

Chain N

uS15

Chain V

eS21

Chain W

uS8

Chain X

uS12

Chain b

eS27