IL_3JAM_052

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

3JAM|1|2|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_052 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1071

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3JAM|1|2|G|1145
3JAM|1|2|A|1146
*
3JAM|1|2|U|1628
3JAM|1|2|A|1629
3JAM|1|2|C|1630

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain a

eS26