IL_3JAM_054

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

3JAM|1|2|C|1157, 3JAM|1|2|C|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42675.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

38

Unit IDs

3JAM|1|2|A|1156
3JAM|1|2|C|1157
3JAM|1|2|C|1158
3JAM|1|2|A|1159
*
3JAM|1|2|U|1615
3JAM|1|2|C|1616
3JAM|1|2|C|1617
3JAM|1|2|C|1618
3JAM|1|2|U|1619

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain a

eS26

Chain c

eS28