IL_3JAM_067

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

3JAM|1|2|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_067 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1799

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JAM|1|2|C|1338
3JAM|1|2|U|1339
3JAM|1|2|A|1340
3JAM|1|2|C|1341
*
3JAM|1|2|G|1381
3JAM|1|2|A|1382
3JAM|1|2|G|1383

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS9

Chain R

eS17

Chain U

uS10

Chain g

RACK1