IL_3JAM_071

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65060.1

Basepair signature

cWW-L-R-tWH-L-R-R-R-R-R-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|G|1478
3JAM|1|2|C|1479
3JAM|1|2|C|1480
3JAM|1|2|A|1481
3JAM|1|2|G|1482
3JAM|1|2|C|1483
3JAM|1|2|G|1484
3JAM|1|2|A|1485
*
3JAM|1|2|U|1517
3JAM|1|2|U|1518
3JAM|1|2|G|1519
3JAM|1|2|U|1520
3JAM|1|2|G|1521
3JAM|1|2|A|1522
3JAM|1|2|A|1523
3JAM|1|2|A|1524
3JAM|1|2|C|1525

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain F

uS7

Chain Q

uS9

Chain T

eS19

Chain U

uS10

Chain Z

eS25

Chain d

uS14