IL_3JAM_085

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

3JAM|1|2|A|1676
3JAM|1|2|G|1677
3JAM|1|2|G|1678
3JAM|1|2|A|1679
3JAM|1|2|U|1680
*
3JAM|1|2|A|1717
3JAM|1|2|G|1718
3JAM|1|2|A|1719
3JAM|1|2|A|1720
3JAM|1|2|U|1721

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain I

eS8