IL_3JAM_091

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_091 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.1684

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|U|117
3JAM|1|2|U|118
3JAM|1|2|A|119
3JAM|1|2|U|120
3JAM|1|2|U|121
3JAM|1|2|U|122
*
3JAM|1|2|A|294
3JAM|1|2|U|295
3JAM|1|2|U|296
3JAM|1|2|C|297
3JAM|1|2|A|298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8