IL_3JAM_094

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_094 not in the Motif Atlas

Homologous match to IL_8P9A_451

Geometric discrepancy: 0.1565

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3JAM|1|2|G|1538
3JAM|1|2|G|1539
3JAM|1|2|G|1540
3JAM|1|2|A|1541
3JAM|1|2|U|1542
3JAM|1|2|A|1543
*
3JAM|1|2|U|1564
3JAM|1|2|U|1565
3JAM|1|2|C|1566
3JAM|1|2|A|1567
3JAM|1|2|A|1568
3JAM|1|2|C|1569

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

uS13

Chain T

eS19