IL_3JAP_025

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_025 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.2904

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

3JAP|1|2|G|388
3JAP|1|2|G|389
3JAP|1|2|A|390
*
3JAP|1|2|U|405
3JAP|1|2|A|406
3JAP|1|2|C|407

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain I

eS8