IL_3JAP_029

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGAUA*UAAUUG

Length

11 nucleotides

Bulged bases

3JAP|1|2|A|505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|478
3JAP|1|2|G|479
3JAP|1|2|A|480
3JAP|1|2|U|481
3JAP|1|2|A|482
*
3JAP|1|2|U|503
3JAP|1|2|A|504
3JAP|1|2|A|505
3JAP|1|2|U|506
3JAP|1|2|U|507
3JAP|1|2|G|508

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain e

eS30