IL_3JAP_032

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AG*CGCGGUAAUUCCAGCU

Length

18 nucleotides

Bulged bases

3JAP|1|2|G|576, 3JAP|1|2|U|577, 3JAP|1|2|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|A|549
3JAP|1|2|G|550
*
3JAP|1|2|C|572
3JAP|1|2|G|573
3JAP|1|2|C|574
3JAP|1|2|G|575
3JAP|1|2|G|576
3JAP|1|2|U|577
3JAP|1|2|A|578
3JAP|1|2|A|579
3JAP|1|2|U|580
3JAP|1|2|U|581
3JAP|1|2|C|582
3JAP|1|2|C|583
3JAP|1|2|A|584
3JAP|1|2|G|585
3JAP|1|2|C|586
3JAP|1|2|U|587

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain X

uS12

Chain e

eS30

Chain i

eIF1A