IL_3JAP_037

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|G|703
3JAP|1|2|C|704
3JAP|1|2|U|705
3JAP|1|2|A|706
3JAP|1|2|A|707
3JAP|1|2|C|708
3JAP|1|2|C|709
3JAP|1|2|U|710
3JAP|1|2|G|711
3JAP|1|2|U|712
3JAP|1|2|A|713
*
3JAP|1|2|U|725
3JAP|1|2|G|726
3JAP|1|2|C|727
3JAP|1|2|A|728
3JAP|1|2|G|729
3JAP|1|2|G|730
3JAP|1|2|C|731
3JAP|1|2|G|732
3JAP|1|2|A|733
3JAP|1|2|A|734
3JAP|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4