IL_3JAP_041

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

3JAP|1|2|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_041 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1411

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3JAP|1|2|G|866
3JAP|1|2|G|867
3JAP|1|2|A|868
3JAP|1|2|C|869
*
3JAP|1|2|G|956
3JAP|1|2|U|957
3JAP|1|2|U|958
3JAP|1|2|U|959
3JAP|1|2|U|960

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

uS15

Chain b

eS27