IL_3JAP_045

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

3JAP|1|2|G|912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_045 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2831

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3JAP|1|2|U|892
3JAP|1|2|U|893
3JAP|1|2|G|894
3JAP|1|2|U|895
3JAP|1|2|C|896
3JAP|1|2|A|897
3JAP|1|2|G|898
*
3JAP|1|2|C|909
3JAP|1|2|U|910
3JAP|1|2|U|911
3JAP|1|2|G|912
3JAP|1|2|G|913
3JAP|1|2|A|914
3JAP|1|2|U|915
3JAP|1|2|U|916
3JAP|1|2|U|917
3JAP|1|2|A|918

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain O

uS11

Chain j

eIF2 alpha