IL_3JAP_048

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3JAP|1|2|U|1051

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_048 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.3581

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JAP|1|2|G|1050
3JAP|1|2|U|1051
3JAP|1|2|G|1052
*
3JAP|1|2|C|1065
3JAP|1|2|C|1066

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

uS2

Chain B

eS1

Chain R

eS17

Chain b

eS27