IL_3JAP_052

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

3JAP|1|2|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_052 not in the Motif Atlas

Geometric match to IL_6CZR_147

Geometric discrepancy: 0.183

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

3JAP|1|2|G|1145
3JAP|1|2|A|1146
*
3JAP|1|2|U|1628
3JAP|1|2|A|1629
3JAP|1|2|C|1630

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain a

eS26

Chain h

eL41

Chain i

eIF1A