IL_3JAP_059

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

3JAP|1|2|G|1227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|A|1222
3JAP|1|2|A|1223
3JAP|1|2|U|1224
3JAP|1|2|A|1225
3JAP|1|2|A|1226
3JAP|1|2|G|1227
3JAP|1|2|G|1228
3JAP|1|2|A|1229
3JAP|1|2|U|1230
3JAP|1|2|U|1231
3JAP|1|2|G|1232
*
3JAP|1|2|C|1251
3JAP|1|2|U|1252
3JAP|1|2|U|1253
3JAP|1|2|G|1254
3JAP|1|2|A|1255
3JAP|1|2|U|1256
3JAP|1|2|U|1257
3JAP|1|2|U|1258
3JAP|1|2|U|1259

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

eS10

Chain M

eS12

Chain d

uS14

Chain f

eS31