IL_3JAP_074

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_074 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1584

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JAP|1|2|G|1538
3JAP|1|2|G|1539
3JAP|1|2|G|1540
3JAP|1|2|A|1541
3JAP|1|2|U|1542
3JAP|1|2|A|1543
*
3JAP|1|2|U|1564
3JAP|1|2|U|1565
3JAP|1|2|C|1566
3JAP|1|2|A|1567
3JAP|1|2|A|1568
3JAP|1|2|C|1569

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

uS13

Chain T

eS19