IL_3JAP_088

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UAUAAG*UGAA

Length

10 nucleotides

Bulged bases

3JAP|1|2|U|66, 3JAP|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_088 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3886

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JAP|1|2|U|64
3JAP|1|2|A|65
3JAP|1|2|U|66
3JAP|1|2|A|67
3JAP|1|2|A|68
3JAP|1|2|G|69
*
3JAP|1|2|U|82
3JAP|1|2|G|83
3JAP|1|2|A|84
3JAP|1|2|A|85

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain Y

eS24