IL_3JAP_090

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UGAAAAAAUUAGAGUGUUCAAAGCAGG*CUCGAAUAUAUUAGCA

Length

43 nucleotides

Bulged bases

3JAP|1|2|G|765, 3JAP|1|2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|U|750
3JAP|1|2|G|751
3JAP|1|2|A|752
3JAP|1|2|A|753
3JAP|1|2|A|754
3JAP|1|2|A|755
3JAP|1|2|A|756
3JAP|1|2|A|757
3JAP|1|2|U|758
3JAP|1|2|U|759
3JAP|1|2|A|760
3JAP|1|2|G|761
3JAP|1|2|A|762
3JAP|1|2|G|763
3JAP|1|2|U|764
3JAP|1|2|G|765
3JAP|1|2|U|766
3JAP|1|2|U|767
3JAP|1|2|C|768
3JAP|1|2|A|769
3JAP|1|2|A|770
3JAP|1|2|A|771
3JAP|1|2|G|772
3JAP|1|2|C|773
3JAP|1|2|A|774
3JAP|1|2|G|775
3JAP|1|2|G|776
*
3JAP|1|2|C|783
3JAP|1|2|U|784
3JAP|1|2|C|785
3JAP|1|2|G|786
3JAP|1|2|A|787
3JAP|1|2|A|788
3JAP|1|2|U|789
3JAP|1|2|A|790
3JAP|1|2|U|791
3JAP|1|2|A|792
3JAP|1|2|U|793
3JAP|1|2|U|794
3JAP|1|2|A|795
3JAP|1|2|G|796
3JAP|1|2|C|797
3JAP|1|2|A|798

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain L

uS17

Chain W

uS8

Chain Y

eS24