IL_3JAP_091

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGUUU*AUCG

Length

9 nucleotides

Bulged bases

3JAP|1|2|U|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_091 not in the Motif Atlas

Homologous match to IL_8P9A_468

Geometric discrepancy: 0.486

The information below is about IL_8P9A_468

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|817
3JAP|1|2|G|818
3JAP|1|2|U|819
3JAP|1|2|U|820
3JAP|1|2|U|821
*
3JAP|1|2|A|849
3JAP|1|2|U|850
3JAP|1|2|C|851
3JAP|1|2|G|852

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS7