IL_3JAP_094

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UAGGGGAUCGAAGAUG*CGUCGUAGUCUUA

Length

29 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|U|981
3JAP|1|2|A|982
3JAP|1|2|G|983
3JAP|1|2|G|984
3JAP|1|2|G|985
3JAP|1|2|G|986
3JAP|1|2|A|987
3JAP|1|2|U|988
3JAP|1|2|C|989
3JAP|1|2|G|990
3JAP|1|2|A|991
3JAP|1|2|A|992
3JAP|1|2|G|993
3JAP|1|2|A|994
3JAP|1|2|U|995
3JAP|1|2|G|996
*
3JAP|1|2|C|1006
3JAP|1|2|G|1007
3JAP|1|2|U|1008
3JAP|1|2|C|1009
3JAP|1|2|G|1010
3JAP|1|2|U|1011
3JAP|1|2|A|1012
3JAP|1|2|G|1013
3JAP|1|2|U|1014
3JAP|1|2|C|1015
3JAP|1|2|U|1016
3JAP|1|2|U|1017
3JAP|1|2|A|1018

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

mRNA

Chain N

uS15

Chain O

uS11

Chain a

eS26

Chain j

eIF2 alpha

Chain m

eIF1

Chain p

eIF3c