IL_3JAP_099

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUCCGGU*GUUUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|G|650
3JAP|1|2|U|651
3JAP|1|2|C|652
3JAP|1|2|C|653
3JAP|1|2|G|654
3JAP|1|2|G|655
3JAP|1|2|U|656
*
3JAP|1|2|G|677
3JAP|1|2|U|678
3JAP|1|2|U|679
3JAP|1|2|U|680
3JAP|1|2|U|681
3JAP|1|2|U|682
3JAP|1|2|C|683

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4