IL_3JAP_103

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_103 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.3506

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

3JAP|1|2|G|1232
3JAP|1|2|A|1233
*
3JAP|1|2|U|1249
3JAP|1|2|U|1250
3JAP|1|2|C|1251

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

eS10

Chain M

eS12

Chain d

uS14

Chain f

eS31