IL_3JAP_106

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUGGCC*GGUCUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_106 not in the Motif Atlas

Geometric match to IL_3D0M_003

Geometric discrepancy: 0.3598

The information below is about IL_3D0M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52736.1

Basepair signature

cWW-cHW-L-R-L-R-cWH-cWW

Number of instances in this motif group

1

Unit IDs

3JAP|1|2|U|1494
3JAP|1|2|U|1495
3JAP|1|2|G|1496
3JAP|1|2|G|1497
3JAP|1|2|C|1498
3JAP|1|2|C|1499
*
3JAP|1|2|G|1504
3JAP|1|2|G|1505
3JAP|1|2|U|1506
3JAP|1|2|C|1507
3JAP|1|2|U|1508
3JAP|1|2|G|1509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain T

eS19