IL_3JAQ_032

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUCCGGU*GUUUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|650
3JAQ|1|2|U|651
3JAQ|1|2|C|652
3JAQ|1|2|C|653
3JAQ|1|2|G|654
3JAQ|1|2|G|655
3JAQ|1|2|U|656
*
3JAQ|1|2|G|677
3JAQ|1|2|U|678
3JAQ|1|2|U|679
3JAQ|1|2|U|680
3JAQ|1|2|U|681
3JAQ|1|2|U|682
3JAQ|1|2|C|683

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4