IL_3JAQ_035

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

3JAQ|1|2|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|751
3JAQ|1|2|A|752
3JAQ|1|2|A|753
3JAQ|1|2|A|754
3JAQ|1|2|A|755
3JAQ|1|2|A|756
3JAQ|1|2|A|757
3JAQ|1|2|U|758
3JAQ|1|2|U|759
3JAQ|1|2|A|760
*
3JAQ|1|2|U|789
3JAQ|1|2|A|790
3JAQ|1|2|U|791
3JAQ|1|2|A|792
3JAQ|1|2|U|793
3JAQ|1|2|U|794
3JAQ|1|2|A|795
3JAQ|1|2|G|796
3JAQ|1|2|C|797

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain L

uS17

Chain W

uS8