IL_3JAQ_037

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

3JAQ|1|2|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_037 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1559

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3JAQ|1|2|G|866
3JAQ|1|2|G|867
3JAQ|1|2|A|868
3JAQ|1|2|C|869
*
3JAQ|1|2|G|956
3JAQ|1|2|U|957
3JAQ|1|2|U|958
3JAQ|1|2|U|959
3JAQ|1|2|U|960

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

uS15

Chain W

uS8

Chain b

eS27