IL_3JAQ_041

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

3JAQ|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_041 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2649

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3JAQ|1|2|U|892
3JAQ|1|2|U|893
3JAQ|1|2|G|894
3JAQ|1|2|U|895
3JAQ|1|2|C|896
3JAQ|1|2|A|897
3JAQ|1|2|G|898
*
3JAQ|1|2|C|909
3JAQ|1|2|U|910
3JAQ|1|2|U|911
3JAQ|1|2|G|912
3JAQ|1|2|G|913
3JAQ|1|2|A|914
3JAQ|1|2|U|915
3JAQ|1|2|U|916
3JAQ|1|2|U|917
3JAQ|1|2|A|918

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain O

uS11