IL_3JAQ_042

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGGAUCGAAG*CGUAGUCU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|983
3JAQ|1|2|G|984
3JAQ|1|2|G|985
3JAQ|1|2|G|986
3JAQ|1|2|A|987
3JAQ|1|2|U|988
3JAQ|1|2|C|989
3JAQ|1|2|G|990
3JAQ|1|2|A|991
3JAQ|1|2|A|992
3JAQ|1|2|G|993
*
3JAQ|1|2|C|1009
3JAQ|1|2|G|1010
3JAQ|1|2|U|1011
3JAQ|1|2|A|1012
3JAQ|1|2|G|1013
3JAQ|1|2|U|1014
3JAQ|1|2|C|1015
3JAQ|1|2|U|1016

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

uS15

Chain O

uS11

Chain a

eS26

Chain m

eIF1

Chain p

eIF3c