IL_3JAQ_060

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

3JAQ|1|2|C|1273, 3JAQ|1|2|U|1430, 3JAQ|1|2|G|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|1270
3JAQ|1|2|U|1271
3JAQ|1|2|G|1272
3JAQ|1|2|C|1273
3JAQ|1|2|A|1274
3JAQ|1|2|U|1275
3JAQ|1|2|G|1276
3JAQ|1|2|G|1277
*
3JAQ|1|2|U|1428
3JAQ|1|2|C|1429
3JAQ|1|2|U|1430
3JAQ|1|2|G|1431
3JAQ|1|2|U|1432
3JAQ|1|2|G|1433
3JAQ|1|2|A|1434
3JAQ|1|2|U|1435
3JAQ|1|2|G|1436
3JAQ|1|2|C|1437

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain K

eS10

Chain U

uS10

Chain d

uS14

Chain f

eS31