IL_3JAQ_064

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

3JAQ|1|2|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_064 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1643

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JAQ|1|2|C|1338
3JAQ|1|2|U|1339
3JAQ|1|2|A|1340
3JAQ|1|2|C|1341
*
3JAQ|1|2|G|1381
3JAQ|1|2|A|1382
3JAQ|1|2|G|1383

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS9

Chain R

eS17

Chain U

uS10

Chain g

RACK1