IL_3JAQ_069
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GUACAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 3JAQ|1|2|A|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_069 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.4032
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JAQ|1|2|G|1486
3JAQ|1|2|U|1487
3JAQ|1|2|A|1488
3JAQ|1|2|C|1489
3JAQ|1|2|A|1490
3JAQ|1|2|A|1491
3JAQ|1|2|C|1492
*
3JAQ|1|2|G|1511
3JAQ|1|2|U|1512
3JAQ|1|2|A|1513
3JAQ|1|2|A|1514
3JAQ|1|2|U|1515
3JAQ|1|2|C|1516
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain K
- eS10
- Chain T
- eS19
- Chain U
- uS10
- Chain d
- uS14
Coloring options: